# Name for the protocol
Name: Glide xp
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# All software packages used and their versions:
Software: Schrodinger2015
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# List of key parameters used for system preparation
System Preparation Parameters: Assumed pH 7.4
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# Plain-text description of system preparation method
System Preparation Method: Maestro's prepwizard was used to add hydrogens using default parameters.  
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# List any number of key computational parameters in the following lines:
Pose Prediction Parameters: Iterated Local Search global optimizer search method
Pose Prediction Parameters: Exhaustiveness=50 #exhaustiveness of global search (default=8)
Pose Prediction Parameters: Glide scoring funtion (empirical + knowledge-based function)
Pose Prediction Parameters: Num_modes=5       #max number of poses to generate
Pose Prediction Parameters: Energy_range=5    #energy difference (kcal/mol) between the best and worst binding mode
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# Provide free text description of your method below. Use as many lines as you need. 
Pose Prediction Method: Docking runs were executed with the above specified parameters while default values
were applied for the rest of the variables. The top 5 poses from the Vina docking are submitted with this protocol. 
